PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00625.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 337aa    MW: 37795.2 Da    PI: 6.811
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00625.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.57.7e-1078118545
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                              k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Rsa1.0_00625.1_g00009.1  78 KTVRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 118
                              667999**********************9877777766555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.4E-874137IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.43876120IPR004827Basic-leucine zipper domain
PfamPF001707.2E-778118IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.9E-878123No hitNo description
SuperFamilySSF579594.42E-778121No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
PfamPF141441.4E-12161207IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVTEESGDVT IWVYSISCKF SVPLSSSNVD LDEKNRMGDT SPRTSGSTDG DMDQNNLMYD  60
GGHVGESSDR SKEKLDQKTV RRLAQNREAA RKSRLRKKAY VQQLENSRLK LTQLEQELQR  120
ARQQGVFISS SGDQSHSTTG NGAMAFDAEY RRWQEDKNRK MKEMSSALDS HASEAELRII  180
VEAVLAHYEE LFRIKSNAAK NDVFHLLLIA SQVEPLTEQQ SQDLNNLQES SQQAEDALSQ  240
GMDSLQQSLS ETLSSGTLGS SSSGNVANYM GQMAMAMGKL GTLEGFIRQA DNLRLQTYQQ  300
MLRKLTTRQS ARALLAIHEY SLRLRALSSL WLARPRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7889450.0FJ788945.1 Brassica napus TGA5 transcription factor (TGA5.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693456.10.0PREDICTED: transcription factor TGA5
RefseqXP_013693455.10.0PREDICTED: transcription factor TGA5
RefseqXP_013616314.10.0PREDICTED: transcription factor TGA5
SwissprotQ391631e-171TGA5_ARATH; Transcription factor TGA5
TrEMBLA0A078FLY20.0A0A078FLY2_BRANA; BnaC02g01780D protein
TrEMBLA0A0D3AI120.0A0A0D3AI12_BRAOL; Uncharacterized protein
STRINGBra028713.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06960.21e-144OCS-element binding factor 5